Communicable Diseases Surveillance: Additional reports

This report contains quarterly reports and data from a number of disease surveillance programs which report regularly to CDI.

Page last updated: 20 July 2007

Childhood immunisation coverage

Tables 1, 2 and 3 provide the latest quarterly report on childhood immunisation coverage from the Australian Childhood Immunisation Register (ACIR).

The data show the percentage of children fully immunised at 12 months of age for the cohort born between 1 October and 31 December 2005, at 24 months of age for the cohort born between 1 October and 31 December 2004, and at 6 years of age for the cohort born between 1 October and 31 December 2000 according to the National Immunisation Program.
For information about the Australian Childhood Immunisation Register see Surveillance systems reported in
CDI, published in Commun Dis Intell 2007;31:163–164 and for a full description of the methodology used by the Register see Commun Dis Intell 1998;22:36-37.

Commentary on the trends in ACIR data is provided by the National Centre for Immunisation Research and Surveillance of Vaccine Preventable Diseases (NCIRS). For further information please contact the NCIRS at telephone: +61 2 9845 1435, Email: brynleyh@chw.edu.au.

Immunisation coverage for children ‘fully immunised’ at 12 months of age for Australia decreased marginally by 0.2 percentage points to 91.0% (Table 1), whilst there were no important changes in coverage for all individual vaccines due at 12 months of age. There were also no noteworthy movements in coverage for individual vaccines by jurisdiction.

Table 1. Percentage of children immunised at 1 year of age, preliminary results by disease and state or territory for the birth cohort 1 October to 31 December 2005; assessment date 31 March 2007

  State or territory  
  ACT NSW NT Qld SA Tas Vic WA Australia
Number of children
1,145
22,544
827
13,626
4,320
1,551
16,486
6,573
67,072
Diphtheria, tetanus, pertussis (%)
92.2
91.7
91.7
91.9
91.6
92.7
92.6
90.5
91.9
Poliomyelitis (%)
92.1
91.5
91.5
91.9
91.6
92.8
92.5
90.5
91.8
Haemophilus influenzae type b (%)
94.9
94.6
94.9
93.9
94.1
95.9
94.8
94.2
94.5
Hepatitis B (%)
95.0
94.6
95.5
93.7
93.9
95.9
94.6
94.0
94.4
Fully immunised (%)
91.9
91.2
90.8
90.8
90.4
92.5
91.3
89.9
91.0
Change in fully immunised since last quarter (%)
0.0
-0.3
-1.5
+0.7
-0.7
-1.5
-0.3
-0.4
-0.2

Immunisation coverage for children ‘fully immunised’ at 24 months of age for Australia decreased marginally from the last quarter by 0.4 percentage points to 92.0% (Table 2). There were no significant changes in coverage in any jurisdiction for ‘fully immunised’ coverage or for coverage for individual vaccines. It is notable that the estimate for 'fully immunised' at 24 months of age has been higher than the 12 months coverage estimate since the 18 month DTPa booster was no longer required from September 2003.

Table 2. Percentage of children immunised at 2 years of age, preliminary results by disease and state or territory for the birth cohort 1 October to 31 December 2004; assessment date 31 March 2007

  State or territory  
  ACT NSW NT Qld SA Tas Vic WA Australia
Number of children
1,038
21,285
756
12,536
4,312
1,417
15,691
6,172
63,207
Diphtheria, tetanus, pertussis (%)
95.9
94.6
96.4
94.1
95.0
96.3
95.5
94.4
94.8
Poliomyelitis (%)
95.8
94.5
96.2
94.1
95.0
96.3
95.4
94.3
94.8
Haemophilus influenzae type b (%)
94.2
93.4
93.9
93.1
93.9
94.8
94.5
92.7
93.6
Measles, mumps, rubella (%)
94.1
93.1
95.1
93.1
94.3
94.9
94.8
92.7
93.7
Hepatitis B(%)
96.1
95.4
97.9
95.1
95.6
96.8
96.2
95.2
95.6
Fully immunised (%)
93.0
91.5
93.3
91.3
92.8
93.9
93.4
90.6
92.0
Change in fully immunised since last quarter (%)
-0.5
-0.6
-1.2
-0.5
+1.8
-0.6
-0.3
-0.2
-0.4

* The 12 months age data for this cohort was published in Commun Dis Intell 2006;30:266

It is also notable that, for the 2 vaccines where no further doses are due between 6 months and 24 months of age (DTP and polio), coverage at the national level was 94.8% and 94.8% respectively at 24 months versus 91.9% and 91.8% at 12 months. This suggests that delayed notification or delayed vaccination is making an important contribution to the coverage estimates at 12 months of age and that the 'fully immunised' estimate in particular is likely to be a minimum estimate.

Table 3 shows immunisation coverage estimates for children ‘fully immunised’ and for individual vaccines at 6 years of age for Australia and by state or territory. For the second consecutive quarter, ‘fully immunised’ coverage for Australia, at 88%, remained at the highest level ever recorded since it was first reported in early 2003. There were no important changes in coverage for all individual vaccines due at 12 months of age and no noteworthy movements in coverage for individual vaccines by jurisdiction.

Table 3. Percentage of children immunised at 6 years of age, preliminary results by disease and state or territory for the birth cohort 1 October to 31 December 2000; assessment date 31 March 2007

  State or territory  
  ACT NSW NT Qld SA Tas Vic WA Australia
Number of children
1,073
22,321
839
13,504
4,444
1,597
16,157
6,573
66,508
Diphtheria, tetanus, pertussis (%)
90.0
89.0
87.4
88.0
86.8
91.5
91.5
84.2
88.8
Poliomyelitis (%)
89.9
88.9
88.0
88.1
86.7
91.6
91.6
84.4
88.9
Measles, mumps, rubella (%)
89.8
89.0
88.1
88.2
86.8
91.6
91.7
84.3
88.9
Fully immunised (%)
88.6
88.1
86.3
87.2
85.9
90.7
91.0
83.2
88.0
Change in fully immunised since last quarter (%)
-0.8
+0.3
-1.8
-0.4
-0.7
+1.4
+0.9
-1.5
+0.1

Figure 1 shows the trends in vaccination coverage from the first ACIR-derived published coverage estimates in 1997 to the current estimates. There is a clear trend of increasing vaccination coverage over time for children aged 12 months, 24 months and 6 years, although the rate of increase has slowed over the past 2 years for all age groups. The recent increase in coverage at 6 years of age, described in the previous paragraph, is apparent in the Figure. It should be noted that currently, coverage for the vaccines added to the National Immunisation Program since 2003 (varicella at 18 months, meningococcal C conjugate at 12 months and pneumococcal conjugate at 2, 4, and 6 months) are not included in the 12 or 24 months coverage data.

Figure 1. Trends in vaccination coverage, Australia, 1997 to 31 December 2006, by age cohorts

Figure 1.	Trends in vaccination coverage, Australia, 1997 to 31 December 2006, by age cohorts

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HIV and AIDS surveillance

National surveillance for HIV disease is coordinated by the National Centre in HIV Epidemiology and Clinical Research (NCHECR), in collaboration with State and Territory health authorities and the Commonwealth of Australia. Cases of HIV infection are notified to the National HIV Database on the first occasion of diagnosis in Australia, by either the diagnosing laboratory (Australian Capital Territory, New South Wales, Tasmania, Victoria) or by a combination of laboratory and doctor sources (Northern Territory, Queensland, South Australia, Western Australia). Cases of AIDS are notified through the State and Territory health authorities to the National AIDS Registry. Diagnoses of both HIV infection and AIDS are notified with the person’s date of birth and name code, to minimise duplicate notifications while maintaining confidentiality.

Tabulations of diagnoses of HIV infection and AIDS are based on data available three months after the end of the reporting interval indicated, to allow for reporting delay and to incorporate newly available information. More detailed information on diagnoses of HIV infection and AIDS is published in the quarterly Australian HIV Surveillance Report, and annually in ‘HIV/AIDS, viral hepatitis and sexually transmissible infections in Australia, annual surveillance report’. The reports are available from the National Centre in HIV Epidemiology and Clinical Research, 376 Victoria Street, Darlinghurst NSW 2010. Internet: www.med.unsw.edu.au/nchecr. Telephone: +61 2 9332 4648. Facsimile: +61 2 9332 1837. For more information see Commun Dis Intell 2005;29:91–92.

HIV and AIDS diagnoses and deaths following AIDS reported for 1 October to 31 December 2006, as repor­ted to 31 March 2007, are included in this issue of Communicable Diseases Intelligence (Tables 4 and 5).

Table 4. New diagnoses of HIV infection, new diagnoses of AIDS and deaths following AIDS occurring in the period 1 October to 31 December 2006, by sex and state or territory of diagnosis

    State or territory Total for Australia
  Sex ACT NSW NT Qld SA Tas Vic WA This period 2006 This period 2005 Year to date 2006 Year to date 2005
HIV diagnoses Female
0
18
2
8
4
0
11
0
43
19
141
92
  Male
0
95
1
47
15
1
61
11
231
216
850
868
  Not reported
0
0
0
0
0
0
0
0
0
0
0
0
  Total*
0
114
3
55
19
1
72
11
275
235
994
961
AIDS diagnoses Female
0
1
0
1
0
0
2
0
4
1
22
27
  Male
0
20
0
3
4
0
11
1
39
53
172
197
  Total*
0
21
0
4
4
0
13
1
43
54
196
224
AIDS deaths Female
0
0
0
0
0
0
1
1
2
2
6
5
  Male
0
8
1
1
1
0
4
2
17
18
71
64
  Total*
0
8
1
1
1
0
5
3
19
20
79
69

* Persons whose sex was reported as transgender are included in the totalS.

Table 5. Cumulative diagnoses of HIV infection, AIDS, and deaths following AIDS since the introduction of HIV antibody testing to 31 December 2006, and reported by 31 March 2007, by sex and state or territory

    State or territory  
  Sex ACT NSW NT Qld SA Tas Vic WA Aust
HIV diagnoses Female
32
873
22
267
100
8
367
203
1,872
  Male
259
13,447
131
2,729
935
100
5,248
1,212
24,061
  Not reported
0
230
0
0
0
0
22
0
252
  Total*
291
14,579
153
3,005
1,036
108
5,659
1,422
26,253
AIDS diagnoses Female
10
253
4
71
32
4
112
41
527
  Male
93
5,414
43
1,030
410
52
1,998
426
9,466
  Total*
103
5,684
47
1,103
443
56
2,122
469
10,027
AIDS deaths Female
7
136
1
42
20
2
61
26
295
  Male
74
3,582
27
663
279
33
1,414
295
6,367
  Total*
81
3,729
28
707
299
35
1,484
322
6,685

* Persons whose sex was reported as transgender are included in the totals.

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Meningococcal surveillance

John Tapsall, The Prince of Wales Hospital, Randwick, NSW, 2031 for the Australian Meningococcal Surveill­ance Programme.

The reference laboratories of the Australian Meningococcal Surveillance Programme report data on the number of laboratory confirmed cases confirmed either by culture or by non-culture based techniques. Culture positive cases, where a Neisseria meningitidis is grown from a normally sterile site or skin, and non-culture based diagnoses, derived from results of nucleic acid amplification assays and serological techniques, are defined as invasive meningococcal disease (IMD) according to Public Health Laboratory Network definitions. Data contained in the quarterly reports are restricted to a description of the number of cases per jurisdiction, and serogroup, where known. A full analysis of laboratory confirmed cases of IMD is contained in the annual reports of the Programme, published in Communicable Diseases Intelligence. For more information see Commun Dis Intell 2007;31:162.

Laboratory confirmed cases of invasive mening­ococcal disease for the period 1 January to 31 March 2007, are included in this issue of Communicable Diseases Intelligence (Table 6).

Table 6. Number of laboratory confirmed cases of invasive meningococcal disease, Australia, 1 January to 31 March 2007, by serogroup and state or territory

Jurisdiction Yearr Serogroup
A B C Y W135 ND All
Q1 YTD Q1 YTD Q1 YTD Q1 YTD Q1 YTD Q1 YTD Q1 YTD
Australian Capital Territory
07
1
1
1
1
2
2
06
0
0
New South Wales
07
12
12
3
3
2
2
17
17
06
9
9
1
1
1
1
4
4
14
14
Northern Territory
07
1
1
1
1
06
1
1
1
1
Queensland
07
11
11
11
11
06
15
15
1
1
16
South Australia
07
1
1
1
1
06
3
3
3
3
Tasmania
07
0
06
1
1
1
1
2
2
Victoria
07
6
6
6
6
06
10
10
2
2
1
1
2
2
15
15
Western Australia
07
3
3
3
3
06
5
5
5
5
Australia
07
35
35
3
3
1
1
2
2
41
41
06
44
44
5
5
1
1
3
3
4
4
57
57

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National Enteric Pathogens Surveillance System

The National Enteric Pathogens Surveillance System (NEPSS) collects, analyses and disseminates data on human enteric bacterial infections diagnosed in Australia. Communicable Diseases Intelligence NEPSS quarterly reports include only Salmonella. NEPSS receives reports of Salmonella isolates that have been serotyped and phage typed by the six Salmonella laboratories in Australia. Salmonella isolates are submitted to these laboratories for typing by primary diagnostic laboratories throughout Australia.

A case is defined as the isolation of a Salmonella from an Australian resident, either acquired locally or as a result of overseas travel, including isolates detected during immigrant and refugee screening. Second and subsequent identical isolates from an individual within six months are excluded, as are isolates from overseas visitors to Australia. The date of the case is the date the primary diagnostic laboratory isolated Salmonella from the clinical sample.

Quarterly reports include historical quarterly mean countS. These should be interpreted cautiously as they may be affected by outbreaks and by surveillance artefacts such as newly recognised and incompletely typed Salmonella.

NEPSS may be contacted at the Microbiological Diag­nostic Unit, Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne; by telephone: +61 3 8344 5701, facsimile: +61 3 8344 7833 or email joanp@unimelb.edu.au

Scientists, diagnostic and reference laboratories contribute data to NEPSS, which is supported by state and territory health departments and the Australian Government Department of Health and Ageing.

Reports to the National Enteric Pathogens Surveillance System of Salmonella infection for the period 1 January to 31 March 2007 are included in Tables 7 and 8. Data include cases reported and entered by 27 April 2007. Counts are preliminary, and subject to adjustment after completion of typing and reporting of further cases to NEPSS. For more information see Commun Dis Intell 2007;31:163–164.

1 January to 31 March 2007

There were 2,527 reports to NEPSS of human Salmonella infection in the first quarter of 2007, 35% more than in fourth quarter of 2006. Data to date for this quarter are somewhat incomplete. Completion of phage typing and data-entry for the many recent S. Typhimurium isolates will result in at least 10% more cases, and a final count for the quarter somewhat above the historical average for this annual peak in human salmonellosis in Australia.

During the first quarter of 2007, the 25 most common Salmonella types in Australia accounted for 1,657 cases, 66% of all reported human Salmonella infections. Nineteen of the 25 most common Salmonella infections in the first quarter of 2006 were also among those most commonly reported in the preceding quarter.

The most notable feature of the current data is the large outbreak of S. Typhimurium phage type 44 in the south-eastern states and S. Typhimurium phage type 9 in South Australia and New South Wales. Other increases and outbreaks include S. Mississippi and S. Typhimurium phage type 135 (in Tasmania), S. Typhimuium phage type 29 (in South Australia), S. Montevideo and S. Wangata (in New South Wales), S. Stanley, S. Newport, S. Cerro and S. London (in Victoria), S. Oslo in the Northern Territory, S. Typhimurium phage type 197 (in Queensland), S. Typhimurium phage type U302 (in New South Wales and Queensland), and S. Typhimurium phage type U307 (in Western Australia and Queensland).

Acknowledgement: We thank scientists, contributing laboratories, state and territory health departments, and the Australian Government Department of Health and Ageing for their contributions to NEPSS.

Table 7. Reports to the National Enteric Pathogens Surveillance System of Salmonella isolated from humans during the period 1 January to 31 March 2007, as reported to 27 April 2007

  State or territory  
  ACT NSW NT Qld SA Tas Vic WA Australia
Total all Salmonella for quarter
32
644
95
713
173
110
534
226
2,527
Total contributing Salmonella types
23
107
35
109
59
18
113
78
228

Table 8. Top 25 Salmonella types identified in Australia, 1 January to 31 March 2007, by state or territory

    State or territory        
National rank Salmonella type ACT NSW NT Qld SA Tas Vic WA Total 1st quarter 2007 Last 10 years mean 1st quarter Year to date 2007 Year to date 2006
1
S. Typhimurium PT 135
2
102
0
46
2
25
34
14
225
247
225
262
2
S. Typhimurium PT 44
5
25
0
12
18
1
103
2
166
25
166
77
3
S. Typhimurium PT 9
1
78
0
19
19
2
40
4
163
182
163
158
4
S. Saintpaul
1
12
5
64
1
1
8
19
111
134
111
167
5
S. Typhimurium PT 170
4
60
0
7
0
1
33
0
105
96
105
167
6
S. Typhimurium PT 197
1
12
1
63
4
1
7
0
89
60
89
41
7
S. Virchow PT 8
0
6
5
67
1
0
2
0
81
104
81
114
8
S. Birkenhead
0
37
0
36
0
0
5
0
78
101
78
112
9
S. Mississippi
0
2
0
3
0
64
4
0
73
41
73
55
10
S. Chester
0
10
4
18
2
2
3
12
51
68
51
65
11
S. Muenchen
1
7
3
20
4
0
2
12
49
59
49
55
12
S. Infantis
0
10
2
5
10
0
16
3
46
49
46
70
13
S. Aberdeen
0
3
0
42
0
0
0
0
45
46
45
67
14
S. Typhimurium PT 12
0
21
0
1
2
2
11
3
40
35
40
40
15
S. Typhimurium PT 29
0
3
3
1
26
0
5
0
38
7
38
9
16
S. Typhimurium (PT pending)
1
1
0
0
1
2
31
1
37
0
37
0
17
S. Hvittingfoss
0
2
1
30
0
0
2
1
36
40
36
65
18
S. Typhimurium RDNC
2
15
0
15
1
0
3
0
36
30
36
37
19
S. Stanley
0
11
1
4
3
0
11
3
33
14
33
25
20
S. Typhimurium untypable
0
4
0
4
0
1
6
15
30
20
30
29
21
S. Montevideo
1
20
0
5
1
0
3
0
30
12
30
14
22
S. Waycross
0
14
0
13
0
0
0
0
27
46
27
60
23
S. Typhimurium PT U302
0
9
0
14
0
0
2
1
26
3.5
26
12
24
S. Oslo
0
1
21
1
0
0
1
0
24
4
24
1
25
S. Typhimurium PT U307
0
3
0
8
0
0
3
4
18
6
18
22

 

This report was published in Communicable Diseases Intelligence Vol 31 No 2, June 2007.

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